python mirscanTrainer.py ath/ath43.round0.train oneSeq.rubyEtAl.py 0 ath/ath.round0.matrix
Traceback (most recent call last):
File "mirscanTrainer.py", line 160, in
scorestring = train(trainFile,criteriaFile,number)
File "mirscanTrainer.py", line 75, in train
for i in mse['mirscan'](fqueries,mse['bogus_ms'],True,fstarts):
File "< string>", line 81, in mirscan
File "/home/yh/Program/miRScan/allScripts/mirscanModule.py", line 538, in pick_side
answers = map(lambda r: pick_side_help(folds[r],seqsoral[r],pos[r],le,r), range(len(seqsoral)))
File "/home/yh/Program/miRScan/allScripts/mirscanModule.py", line 538, in
answers = map(lambda r: pick_side_help(folds[r],seqsoral[r],pos[r],le,r), range(len(seqsoral)))
File "/home/yh/Program/miRScan/allScripts/mirsc anModule.py", line 520, in pick_side_help
p = count_along(pos,0,le,1,seq)
File "/home/yh/Program/miRScan/allScripts/mirscanModule.py", line 511, in count_along
if seq[zp]!='-': zq+=1
IndexError: string index out of range